emc by default runs g64 -blending. If your accelleration is set pretty low - you will see the next axis start moving before the previous one stops.
You could..
G64Px.xxx where x.xxx is how far you will let the blending deviate from the programmed path.
or exact stop mode - g61.
you can read about it here.
http://wiki.linuxcnc.org/cgi-bin/emc...jectoryControl
sam